PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 245aa    MW: 26688.7 Da    PI: 5.1932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017230.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0881122650
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                   rE+ RRd++N++f eL + l +    +  K +Ka+iL  A+  
  Do017230.1  81 ACREKMRRDKLNDRFLELGSTLEPG---KPIKADKAAILSDATXM 122
                 679*********************9...8999********99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1273145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.36975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-776131No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1180149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-681122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-781132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSLPPADGGG GATGDEWFLD CGILDDLPAG ACGAFPWDAS PSSSNPSVEV GSYVNTSDVF  60
KEPGSNKRLR XGSSGRPTPK ACREKMRRDK LNDRFLELGS TLEPGKPIKA DKAAILSDAT  120
XMVIXLRSEA QQLKDTNGSL EEKIKELKAE KDELRDEKQK LKLEKESLEH QMKLMTSTPA  180
YMPHPALMPA PFPQAPLAPF HPQGQAAGQK LMMPFVSYPG YPMWQFMPPS EVDTSKDSEA  240
CPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972892.11e-161PREDICTED: transcription factor ILR3
SwissprotQ9FH373e-72ILR3_ARATH; Transcription factor ILR3
TrEMBLK3YJC01e-161K3YJC0_SETIT; Uncharacterized protein
STRINGSi014339m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-46bHLH family protein